Regulator

Summary of regulator annotations and link-out to annotation databases

Basic gene annotations are collected from Uniprot and displayed with links to original sources. A quick link to explore the genomic context with Uniprot Browser is available.

TBP - TATA-box binding protein

Function

The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription (PubMed:33795473). TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TATA-box-binding protein, and promotes assembly of the pre-initiation complex (PIC) (PubMed:33795473, PubMed:27193682, PubMed:2194289, PubMed:2363050, PubMed:2374612). The TFIID complex consists of TBP and TBP-associated factors (TAFs), including TAF1, TAF2, TAF3, TAF4, TAF5, TAF6, TAF7, TAF8, TAF9, TAF10, TAF11, TAF12 and TAF13 (PubMed:33795473, PubMed:27007846). The TFIID complex structure can be divided into 3 modules TFIID-A, TFIID-B, and TFIID-C (PubMed:33795473). TBP forms the TFIID-A module together with TAF3 and TAF5 (PubMed:33795473). TBP is a general transcription factor that functions at the core of the TFIID complex (PubMed:33795473, PubMed:27193682, PubMed:2194289, PubMed:2363050, PubMed:2374612, PubMed:9836642). During assembly of the core PIC on the promoter, as part of TFIID, TBP binds to and also bends promoter DNA, irrespective of whether the promoter contains a TATA box (PubMed:33795473). Component of a BRF2-containing transcription factor complex that regulates transcription mediated by RNA polymerase III (PubMed:26638071). Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC during RNA polymerase I-dependent transcription (PubMed:15970593). The rate of PIC formation probably is primarily dependent on the rate of association of SL1 with the rDNA promoter (PubMed:15970593). SL1 is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA (PubMed:15970593).

Uniprot Browser
Entrez IDEnsEMBL IDPreferred NameUniprot ID
6908 ENSG00000112592 TBP P20226

List of causal flows containing the regulator.

Causal Flows are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation may causally activate or deactivate a downstream regulator which then might up- down-regulates a regulonthat contains genes with similar expression profiles and binding sites.

Causal Mechanistic Flows with ENSG00000112592 as Regulator

IDMutationRoleRegulatorRoleRegulon# downstream regulons# diffexp regulonsDrugs
CMF-02526MMP3up-regulatesTBPactivatesR-3475185Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-02528MMP3up-regulatesTBPactivatesR-3462185Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-02558HECW1up-regulatesTBPactivatesR-3475183Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-04920ABCC5up-regulatesTBPactivatesR-3462184Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-05229C6orf170up-regulatesTBPactivatesR-3462185Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-05496IL18RAPup-regulatesTBPactivatesR-3462187Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-05497IL18RAPup-regulatesTBPactivatesR-3460187Drugs (11)
CMF-05872ZNF813up-regulatesTBPactivatesR-3475181Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-12981DNAH1up-regulatesTBPactivatesR-3462181Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-14548GABRA4up-regulatesTBPactivatesR-3475183Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-14550GABRA4up-regulatesTBPactivatesR-3460183Drugs (11)
CMF-15187ERCC6down-regulatesTBPactivatesR-3475181Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-16598KRTAP5-4up-regulatesTBPactivatesR-3475184Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-18815SLFN13up-regulatesTBPactivatesR-3462183Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-19029UPF1up-regulatesTBPactivatesR-3460182Drugs (11)
CMF-20755TLR7up-regulatesTBPactivatesR-3475184Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-20757TLR7up-regulatesTBPactivatesR-3462184Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-23207RNF17up-regulatesTBPactivatesR-3459183Drugs (8)
CMF-23462OR8H3up-regulatesTBPactivatesR-3462185Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-23500CUBNup-regulatesTBPactivatesR-3462181Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-24788HIST1H2BEup-regulatesTBPactivatesR-3459181Drugs (8)
CMF-26096MST1P9up-regulatesTBPactivatesR-3460182Drugs (11)
CMF-27091NBASup-regulatesTBPactivatesR-3475183Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-27093NBASup-regulatesTBPactivatesR-3462183Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-27908CXorf22up-regulatesTBPactivatesR-3459188Drugs (8)
CMF-29530TM7SF4down-regulatesTBPactivatesR-3462184Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)

CMF-30326ZNF71up-regulatesTBPactivatesR-3462182Drugs (0)

Regulator Drugs (0)

Regulon Drugs (0)