Basic gene annotations are collected from Uniprot
and displayed with links to original sources. A quick link to explore the genomic context with Uniprot Browser
is available.
TBP - TATA-box binding protein
Function
The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription (PubMed:33795473). TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TATA-box-binding protein, and promotes assembly of the pre-initiation complex (PIC) (PubMed:33795473, PubMed:27193682, PubMed:2194289, PubMed:2363050, PubMed:2374612). The TFIID complex consists of TBP and TBP-associated factors (TAFs), including TAF1, TAF2, TAF3, TAF4, TAF5, TAF6, TAF7, TAF8, TAF9, TAF10, TAF11, TAF12 and TAF13 (PubMed:33795473, PubMed:27007846). The TFIID complex structure can be divided into 3 modules TFIID-A, TFIID-B, and TFIID-C (PubMed:33795473). TBP forms the TFIID-A module together with TAF3 and TAF5 (PubMed:33795473). TBP is a general transcription factor that functions at the core of the TFIID complex (PubMed:33795473, PubMed:27193682, PubMed:2194289, PubMed:2363050, PubMed:2374612, PubMed:9836642). During assembly of the core PIC on the promoter, as part of TFIID, TBP binds to and also bends promoter DNA, irrespective of whether the promoter contains a TATA box (PubMed:33795473). Component of a BRF2-containing transcription factor complex that regulates transcription mediated by RNA polymerase III (PubMed:26638071). Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC during RNA polymerase I-dependent transcription (PubMed:15970593). The rate of PIC formation probably is primarily dependent on the rate of association of SL1 with the rDNA promoter (PubMed:15970593). SL1 is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA (PubMed:15970593).
Uniprot BrowserEntrez ID | EnsEMBL ID | Preferred Name | Uniprot ID |
---|---|---|---|
6908 | ENSG00000112592 | TBP | P20226 |
Causal Flows
are statistically significant links between putative causal events (somatic mutations, copy number variations, chromosomal translocations, etc.) and the activity levels of regulators and regulons. In the causal flow, a mutation
may causally activate or deactivate a downstream regulator
which then might up- down-regulates a regulon
that contains genes with similar expression profiles and binding sites.
Causal Mechanistic Flows with ENSG00000112592 as Regulator
ID | Mutation | Role | Regulator | Role | Regulon | # downstream regulons | # diffexp regulons | Drugs |
---|---|---|---|---|---|---|---|---|
CMF-02526 | MMP3 | up-regulates | TBP | activates | R-3475 | 18 | 5 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-02528 | MMP3 | up-regulates | TBP | activates | R-3462 | 18 | 5 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-02558 | HECW1 | up-regulates | TBP | activates | R-3475 | 18 | 3 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-04920 | ABCC5 | up-regulates | TBP | activates | R-3462 | 18 | 4 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-05229 | C6orf170 | up-regulates | TBP | activates | R-3462 | 18 | 5 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-05496 | IL18RAP | up-regulates | TBP | activates | R-3462 | 18 | 7 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-05497 | IL18RAP | up-regulates | TBP | activates | R-3460 | 18 | 7 | Drugs (11) Regulator Drugs (0)Regulon Drugs (11)RIMEGEPANT SULFATE, TELCAGEPANT, ATOGEPANT, UBROGEPANT, ERENUMAB, 2X-121, RIMEGEPANT, BI-44370, MK3207, DAVALINTIDE, OLCEGEPANT |
CMF-05872 | ZNF813 | up-regulates | TBP | activates | R-3475 | 18 | 1 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-12981 | DNAH1 | up-regulates | TBP | activates | R-3462 | 18 | 1 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-14548 | GABRA4 | up-regulates | TBP | activates | R-3475 | 18 | 3 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-14550 | GABRA4 | up-regulates | TBP | activates | R-3460 | 18 | 3 | Drugs (11) Regulator Drugs (0)Regulon Drugs (11)RIMEGEPANT SULFATE, TELCAGEPANT, ATOGEPANT, UBROGEPANT, ERENUMAB, 2X-121, RIMEGEPANT, BI-44370, MK3207, DAVALINTIDE, OLCEGEPANT |
CMF-15187 | ERCC6 | down-regulates | TBP | activates | R-3475 | 18 | 1 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-16598 | KRTAP5-4 | up-regulates | TBP | activates | R-3475 | 18 | 4 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-18815 | SLFN13 | up-regulates | TBP | activates | R-3462 | 18 | 3 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-19029 | UPF1 | up-regulates | TBP | activates | R-3460 | 18 | 2 | Drugs (11) Regulator Drugs (0)Regulon Drugs (11)RIMEGEPANT SULFATE, TELCAGEPANT, ATOGEPANT, UBROGEPANT, ERENUMAB, 2X-121, RIMEGEPANT, BI-44370, MK3207, DAVALINTIDE, OLCEGEPANT |
CMF-20755 | TLR7 | up-regulates | TBP | activates | R-3475 | 18 | 4 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-20757 | TLR7 | up-regulates | TBP | activates | R-3462 | 18 | 4 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-23207 | RNF17 | up-regulates | TBP | activates | R-3459 | 18 | 3 | Drugs (8) Regulator Drugs (0)Regulon Drugs (8)TAS0612, LANATOSIDE C, DIGOXIN, ACETYLDIGITOXIN, OCRIPLASMIN, DIGITOXIN, DESLANOSIDE, ISTAROXIME |
CMF-23462 | OR8H3 | up-regulates | TBP | activates | R-3462 | 18 | 5 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-23500 | CUBN | up-regulates | TBP | activates | R-3462 | 18 | 1 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-24788 | HIST1H2BE | up-regulates | TBP | activates | R-3459 | 18 | 1 | Drugs (8) Regulator Drugs (0)Regulon Drugs (8)TAS0612, LANATOSIDE C, DIGOXIN, ACETYLDIGITOXIN, OCRIPLASMIN, DIGITOXIN, DESLANOSIDE, ISTAROXIME |
CMF-26096 | MST1P9 | up-regulates | TBP | activates | R-3460 | 18 | 2 | Drugs (11) Regulator Drugs (0)Regulon Drugs (11)RIMEGEPANT SULFATE, TELCAGEPANT, ATOGEPANT, UBROGEPANT, ERENUMAB, 2X-121, RIMEGEPANT, BI-44370, MK3207, DAVALINTIDE, OLCEGEPANT |
CMF-27091 | NBAS | up-regulates | TBP | activates | R-3475 | 18 | 3 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-27093 | NBAS | up-regulates | TBP | activates | R-3462 | 18 | 3 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-27908 | CXorf22 | up-regulates | TBP | activates | R-3459 | 18 | 8 | Drugs (8) Regulator Drugs (0)Regulon Drugs (8)TAS0612, LANATOSIDE C, DIGOXIN, ACETYLDIGITOXIN, OCRIPLASMIN, DIGITOXIN, DESLANOSIDE, ISTAROXIME |
CMF-29530 | TM7SF4 | down-regulates | TBP | activates | R-3462 | 18 | 4 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |
CMF-30326 | ZNF71 | up-regulates | TBP | activates | R-3462 | 18 | 2 | Drugs (0) Regulator Drugs (0)Regulon Drugs (0) |